| BEE 1200 | The BEE Experience |
| BEE 1510 | Introduction to Computer Programming |
| BEE 2220 | Bioengineering Thermodynamics and Kinetics |
| BEE 2510 | Engineering for a Sustainable Society (also ENGRD 2510) |
| BEE 2600 | Principles of Biological Engineering (also ENGRD 2600) |
| BEE 3050 | Principles of Navigation (also NAVS 3050) |
| BEE 3299 | Sustainable Development: A Web-Based Course |
| BEE 3310 | Bio-Fluid Mechanics |
| BEE 3500 | Biological and Environmental Transport Processes |
| BEE 3600 | Molecular and Cellular Bioengineering (also BME 3600) |
| BEE 3650 | Properties of Biological Materials |
| BEE 3680 | Biotechnology Applications: Animal Bioreactors |
| BEE 3710 | Physical Hydrology for Ecosystems -- Not Offered This Year |
| BEE 4010 | Renewable Energy Systems |
| BEE 4270 | Water Measurement and Analysis Methods |
| BEE 4350 | Principles of Aquaculture |
| BEE 4500 | Bioinstrumentation |
| BEE 4530 | Computer-Aided Engineering: Applications to Biomedical Processes (also MAE 4530) |
| BEE 4540 | Physiological Engineering -- Not Offered This Year |
| BEE 4590 | Biosensors and Bioanalytical Techniques |
| BEE 4600 | Deterministic and Stochastic Modeling in Biological Engineering |
| BEE 4640 | Bioseparation Processes |
| BEE 4710 | Introduction to Groundwater (also EAS 4710) -- Not Offered This Year |
| BEE 4730 | Watershed Engineering |
| BEE 4740 | Water and Landscape Engineering Applications |
| BEE 4750 | Environmental Systems Analysis |
| BEE 4760 | Solid Waste Engineering |
| BEE 4800 | Our Changing Atmosphere: Global Change and Atmospheric Chemistry (also EAS 4800) |
| BEE 4810 | LRFD–Based Engineering of Wood Structures (also CEE 4810) |
| BEE 4840 | Metabolic Engineering |
| BEE 4860 | Industrial Ecology of Agriculturally Based Bioindustries |
| BEE 4870 | Sustainable Energy Systems |
| BEE 4890 | Entrepreneurial Management for Engineers |
| BEE 4900 | Biofuels: The Economic and Environmental Interactions (also AEM 6900) |
| BEE 4930 | Technical Writing for Engineers |
| BEE 4940 | Special Topics in Biological and Environmental Engineering |
| BEE 4960 | Capstone Design in Biological and Environmental Engineering |
| BEE 4970 | Individual Study in Biological and Environmental Engineering |
| BEE 4980 | Undergraduate Teaching |
| BEE 4990 | Undergraduate Research |
| BEE 4991–4992 | BEE Honors Research |
| BEE 5010 | Bioengineering Seminar (also BME 5010) |
| BEE 5330 | Engineering Professionalism |
| BEE 5901–5902 | M.P.S. Project |
| BEE 5951–5952 | Master of Engineering Design Project |
| BEE 6430 | Veterinary Perspectives on Pathogen Control in Animal Manure (also VTMED/BIOMI 6430) |
| BEE 6470 | Water Transport in Plants (also BIOPL 6510) |
| BEE 6490 | Solute Transport in Plants (also BIOPL 6490) -- Not Offered This Year |
| BEE 6510 | Bioremediation: Engineering Organisms to Clean Up the Environment -- Not Offered This Year |
| BEE 6550 | Thermodynamics and Its Applications |
| BEE 6590 | Biosensors and Bioanalytical Techniques |
| BEE 6710 | Analysis of the Flow of Water and Chemicals in Soils -- Not Offered This Year |
| BEE 6720 | Drainage |
| BEE 6740 | Ecohydrology |
| BEE 6870 | The Science and Engineering Challenges to the Development of Sustainable Bio-Based Industries |
| BEE 6940 | Graduate Special Topics in Biological and Environmental Engineering |
| BEE 6970 | Graduate Individual Study in Biological and Environmental Engineering |
| BEE 7000 | Orientation to Graduate Study |
| BEE 7010 | BEE Seminar Series |
| BEE 7540 | The Right to Water |
| BEE 7600 | Nucleic Acid Engineering (also BME 7600) |
| BEE 7710 | Soil and Water Engineering Seminar |
| BEE 8900 | Master’s-Level Thesis Research |
| BEE 9900 | Doctoral-Level Thesis Research |
